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Clean and Green

SEI’s Clean and Green framework supports rural communities in managing sanitation risks and reusing local waste resources, promoting safe recycling and improved hygiene while enhancing water and agricultural sustainability.

Active project

2020–2025

Clean and Green is an implementation framework developed by SEI to support more comprehensive management of waste-related risks and resources in rural villages, particularly in contexts characterized by sanitation challenges and reliance on small-scale agriculture.

The framework strengthens rural sanitation and hygiene while enabling households and communities to benefit from the safe recovery and reuse of nutrients, organic matter and water found in local waste flows. In doing so, Clean and Green promotes a more holistic approach to sanitation, addressing health protection (Clean) and environmental sustainability (Green) together, at both household and community levels.

This webpage brings together key information about the Clean and Green framework, including an overview of the recommended implementation steps and links to support tools and documents.

The framework was initially developed and tested in Burkina Faso, but can also be adapted to other contexts. The SEI team is open to collaborating with partners interested in further adapting and testing the Clean and Green framework in new settings.

Structure of Clean and Green framework

In many countries, eliminating open defecation through community-led total sanitation (CLTS) is a central element of rural sanitation policy and practice. Achieving open defecation free (ODF) status is therefore included as a recommended entry level in the Clean and Green framework, as it reduces health risks from faecal exposure while building community engagement around sanitation (see Figure 1). At the second level of the Clean and Green framework, progress is pursued along two parallel tracks with a focus on risk and resource management.

Level 0 is the typical baseline situation in many rural communities. Level 1 is often part of rural sanitation interventions, including eliminating open defecation and adopting basic hygiene practices. At Level 2, the ambitions are raised, with more comprehensive management of local risks on the Clean track and the safe and productive management of waste resources on the Green track.

Figure 1. Overview of the Clean and Green framework.

Level 0 is the typical baseline situation in many rural communities. Level 1 is often part of rural sanitation interventions, including eliminating open defecation and adopting basic hygiene practices. At Level 2, the ambitions are raised, with more comprehensive management of local risks on the Clean track and the safe and productive management of waste resources on the Green track.

SEI / Mia Shu and Linus Dagerskog

The Clean track emphasizes health protection and includes consistent toilet use and maintenance, as well as a plan for safe faecal sludge management. Beyond toilet-related aspects, the Clean track also emphasizes safe hygiene practices with handwashing at critical times, basic food and water hygiene, and the safe management of greywater, animal excreta and solid waste.

The Green track emphasizes the safe and productive use of resources contained in local waste flows including nutrients, organic matter and water to support agriculture and, in some cases, energy production.

Relationship between the tracks

Villages or authorities may choose to focus only on the Clean track if their main goal is to protect public health, without necessarily aiming for resource recovery or reuse.

If a community or household chooses to pursue the Green track, safety measures included in the Green indicators must be applied. Achieving Green status will therefore fulfil many Clean indicators, since consistent waste flow collection and risk reduction measures are part of safe reuse.

However, not all Clean indicators are covered by the Green track. The Clean track also addresses other essential public health aspects – such as safe water handling, food hygiene, solid waste management and comprehensive handwashing practices – outside the scope of safe reuse.

Clean and Green principles

To help ensure long-term sustainability and equity, the guiding principles of the Clean and Green framework emphasize:

  1. Local acceptability and participation – to foster ownership, relevance and commitment;
  2. Leaving no one behind – to ensure inclusion and support for the most vulnerable;
  3. Shared work and benefits – to promote fair distribution of responsibilities and potential benefits, both within household and across communities.

Why is Clean and Green relevant?

Rural sanitation and hygiene programs usually have a strong focus on human excreta, promoting the construction and use of toilets as well as handwashing at critical times. However, a growing body of research shows that a more comprehensive approach is needed to target the multiple pathogen pathways in the local environment. Beyond human excreta, this includes for example reducing exposure to animal excreta and strengthening food and water hygiene practices.

Similarly, all major household and community waste flows containing nutrients, organic matter and water need to be safely and efficiently reused to enhance agricultural production and environmental sustainability. In many rural settings, this includes the safe reuse of animal and human urine and faeces, organic waste, ash and greywater.

However, there is a lack of sanitation implementation frameworks that support such integrated management of both health risks and recoverable resources, often resulting in uncoordinated and partial interventions. Clean and Green was developed to help fill this gap by combining the strong community engagement of community-led total sanitation (CLTS) with the systems perspective of ecological sanitation.

How has it been developed?

The Clean and Green framework was conceptually developed under the SEI Sustainable Sanitation Initiative in 2017, inspired by both the strengths and limitations of CLTS and ecological sanitation programs. Between 2020 and 2023, Clean and Green was further developed and piloted in collaboration with WaterAid as an action-research component of a Sida-financed rural sanitation program in Burkina Faso. WaterAid supported 700 villages to become open defecation free (ODF), and Clean and Green was introduced in three of the ODF-declared villages as a second step to raise sanitation ambitions and stimulate safe reuse. 

In 2025–2026, SEI is exploring the potential of the Clean and Green framework in rural Bolivia through studies under the Bolivia WATCH program.

resource flow mapping
Sensitization tools: Resource flow mapping and the excreta circuit (Photos Danièle Sebgo/WaterAid)
Farmer field school to evaluate the effect of urine and faecal compost on sorghum production. Photo: Danièle Sebgo/WaterAid
Farmer field school to evaluate the effect of urine and faecal compost on sorghum production. Photo: Danièle Sebgo/WaterAid
Construction of a urine diverting double vault latrine.

Clean and Green process

The following seven steps offer guidance and support to initiatives aiming to help communities achieve Clean and Green status. The steps are divided into three phases:

  • Preparing the ground (steps 1–3)
  • Clean and Green action (steps 4–5)
  • Following up (steps 6–7)
Clean and Green process

Clean and Green process Image: Linnéa Haviland / SEI

In many countries, achieving open defecation–free (ODF) status is a common policy starting point for rural sanitation and would therefore precede Clean and Green implementation. At the same time, Clean and Green can also be applied in non-ODF contexts. ODF is therefore presented here as a “preliminary step”.

Preliminary step: end open defecation (e.g. through methods such as CLTS)

Open defecation is the primary source of pathogen contamination and spread of disease. In many countries, the policy for rural sanitation is to end open defecation and strengthen basic hygiene practices. Addressing open defecation removes a major contamination source and can be seen as a first important step towards a more integrated management of risks and resources in the local environment.

How? A common approach is to apply a CLTS method. This includes mapping open defecation sites, demonstrating faecal–oral contamination, and triggering disgust and collective action. Emphasizing inclusivity ensures that marginalized households are not left behind.

Infrastructure is not subsidized in the original CLTS approach in order to enhance ownership. In some countries, there is a subsidy of key hardware such as latrine slabs, to ensure that toilets achieve the minimum hygienic standard.

When all households in the community have reached the common sanitation and hygiene goals, there is a verification and certification process to become an open-defecation–free (ODF) village. After a first verification of ODF, the community needs to prove the ability to sustain the new practices for a set period of time before being certified ODF.

References and inspiration:

Step 1: Understanding the local context

Understanding the local context icon

Understanding the local context is essential for designing a Clean and Green intervention that reflects community realities, priorities and opportunities. This involves early engagement with regional, local and community leaders, along side a baseline study to gather information on current conditions in water, sanitation, hygiene, waste management and agricultural practices. Together, these activities guide Clean and Green implementation, while the baseline study also provides a reference point for later impact evaluation.

Anchoring Clean and Green with relevant leaders

Engaging regional, local and community leaders early on is essential to establish legitimacy and local ownership. It also helps the project team better understand how communities are organized, who is responsible for sanitation and agriculture-related issues, and which ongoing initiatives or constraints need to be taken into account during implementation.

Typical activities include:

  • Inception meetings with regional and local authorities, village leaders and associations (e.g. women’s and youth groups, farmer associations, religious leaders).
  • At a later stage, restitution of baseline results and discussion of the Clean and Green process and intervention goals, including clarification of roles and expectations.

References and inspiration:

  • EcoSan Club publication: Sustainable Sanitation Practices (see p. 6 for an example of introducing reuse projects to community members and leaders)
  • Report on the introductory phase of a productive sanitation project in Niger (in French)
Assessing the baseline situation

A baseline study helps build a picture of current conditions and practices. Useful aspects to capture include:

  • An overview of current agriculture, WASH and waste management practices
  • Insights into attitudes, knowledge, and gender-specific roles related to sanitation and waste management
  • Information on fertilizer use (chemical and organic) and household expenditures related to health care and medication.

A conventional baseline approach is based on household surveys to gather quantitative and representative data. Alternatively, participatory rural appraisal (PRA) methods – such as mapping exercises and focus group discussions – can offer a less quantitative but still informative assessment to capture community perspectives.

This stage typically takes one to three months and is usually led by the project implementation team, often in collaboration with local associations, authorities or research institutions.

References and inspiration:

Step 2: Engaging the community

Engaging the community icon

This step marks the transition from a focus on sanitation coverage to “productive sanitation”, encouraging engagement in the Clean and Green process, with higher ambitions for both risk and resource management.

This step typically takes place shortly after the baseline study and is led by the project team in close collaboration with local authorities and community facilitators. It usually involves a community meeting to share baseline results and highlight key opportunities to reduce risks and recover resources in the local environment.

Clean track – risk management

Reducing health risks through improved waste-flow management and hygiene practices is the core focus of the Clean track. Facilitators can:

  • Use baseline data on household health care and medical expenditures to spark discussions on how improved hygiene and risk management can reduce illness and health-related costs.
  • Highlight the importance of addressing all relevant waste flows – not only human waste but also animal waste, greywater, solid waste, and food and water hygiene – at both household and community levels.

By engaging in the Clean track, households can strengthen their capacity and adopt practices that reduce risks and improve overall health.

Green track – resource management

Nutrients, organic matter and water are all valuable agricultural inputs found in many local waste-flows. The aim is to help the community recognize the “value in waste”, particularly in human excreta, which represents a large and often untapped local resource.

Resources in human excreta
  • Facilitators introduce the concept of nutrient circularity: To grow well, plants take up nutrients such as nitrogen (N), phosphorus (P), and potassium (K) from the soil; these nutrients are then part of the food we eat and almost all are later excreted in urine and faeces. If this were not the case, we would continuously gain weight; even in children, only a small fraction of nutrients in the food they eat becomes new body tissue. Nutrients are used by the body, but then excreted and can be safely returned to the soil to sustain new crops, closing the nutrient loop.
  • Estimates of nutrient quantities in excreta:
    • Using FAO country data on protein intake, facilitators estimate the average annual nutrient quantity excreted per person and express it in equivalent kilograms of chemical fertilizer – a tangible reference for farmers.
    • Participants then estimate the total fertilizer quantity and monetary value for a typical household and for the entire community.
    • This exercise often leads to a powerful realization of the hidden value in the urine and faeces everyone produces, as well as the importance of managing these resources safely and productively.
Resources in other waste flows:
  • Valuable resources are also present in animal excreta, organic waste, ash and greywater. Some are likely already reused, but there is typically untapped potential. For example:
    • Bedding for livestock can absorb urine, significantly increasing the amount of manure compost produced.
    • Greywater, often a health hazard when stagnant, can be safely reused in composting pits or piles, mulch beds, or infiltration systems to support crop production or groundwater recharge.

By engaging in the Green track, households will be able to explore and adopt safe and practical reuse options for all major local waste flows.

Confirming Clean and Green engagement

The session concludes by confirming the community’s engagement in the Clean and Green process – for example, by agreeing on relevant waste flows in their local context and establishing a local Clean and Green committee to coordinate actions on both household and community levels.

References and inspiration: 

Calculation of nutrients in excreta: : In Burkina Faso, calculations showed that urine and faeces contain the equivalent of 15 kg of chemical fertilizer per person per year (NPK (15:15:15) and Urea, common in Burkina Faso), or more than 80 kg for an average household of 5.6 people. This represents a value of EUR 7–15 per person/year or EUR 40–85 per household/year, depending on fertilizer prices. SEI 2023 Report (PDF)

Step 3: Enhancing awareness and capacity

Enhancing awareness and capacity icon

For Clean and Green to succeed, households and communities need to become aware of local health risks and resource opportunities, and build the capacity to manage them safely. This includes understanding how everyday practices can create health risks – not only from waste flows (human and animal excreta, solid waste and greywater), but also from inadequate handwashing, water handling and food hygiene (Clean track).

At the same time, households need to recognize that local waste flows contain valuable nutrients, organic matter and water, and understand how good waste flow management conserves these resources for safe and productive reuse (Green track).

Sensitization and training provide the knowledge and motivation needed for better risk reduction and productive reuse. They are best carried out through participatory sessions that build on baseline findings and the earlier community engagement step. These sessions are typically coordinated by the project team and are often carried out in collaboration with extension agents and community facilitators.

Activities can be organized at the community or neighbourhood level but may also include household visits. Training should be interactive, practical and adapted to local languages and literacy levels, with a strong emphasis on hands-on demonstrations.

A range of participatory tools can be used to help communities understand local risks and resources, as well as to explore possible measures to manage them better. The table below presents a selection of tools that have been used in Clean and Green implementation, their objectives and key references:

Track Participatory Tool Objective and Tool Description Links
Clean track Three pile sorting of cards (PHAST) Awareness/capacity: The participants classify three cards as unsafe/somewhat safe/safe for different risk situations. Discussions follow on the reasoning for the proposed classification and what constitutes good hygienic practices and a clean local environment. WHO PHAST initiative
Transmission pathways for animal excreta Awareness/capacity: Illustrated cards are placed by participants to map out the faecal-oral pathways from animal excreta. Discussions follow on how to break these pathways through sanitation and hygiene measures. CAWST Animal Excreta Management Tools
Transmission pathways for human excreta Awareness/capacity: Illustrated cards are placed by participants to map out the faecal-oral pathways from human excreta. Discussions follow on how to break these pathways through sanitation and hygiene measures. WEDC “F- diagram”
Green track Resource Flow Mapping Diagnostics: A resource flow map is drawn in a focus group illustrating the local production and use of food, fodder, water, fuelwood and construction material on household level. Current management and destinations of these waste flows are also mapped out. Weaknesses are identified, and different possible solutions are discussed. The results help orient the reuse interventions.

Awareness: The same tool can also be used to raise awareness at the implementation stage on the links between agricultural production and waste management.

SEI’s Resource Flow Mapping Tool
The Human Excreta Loop Awareness/capacity: The sanitation chain of collection, treatment, transport and application is illustrated on cards, and participants place them in a circuit to close the loop. Discussions follow about practices that protect health and conserve resources at different steps in the chain. Human excreta loop instructions from Niger, see pp 15-16 in this guide (in French)

ECOSAN info (illlustrations of excreta loop in rural areas)

Step 4: Identifying and adopting appropriate technologies and practices

Identifying and adopting appropriate technologies and practices icon

Building on awareness and capacity developed in earlier steps, this stage focuses on selecting and adopting technologies and practices that translate Clean and Green ambitions into concrete action at household and community levels. Clean and Green implementation strategies should be technology neutral. This means they focus on the desired outcomes – such as reducing human and environmental exposure risks and enabling the safe and productive reuse of resources – rather than promoting a specific technology or reuse method from the outset. Technologies and practices should be selected based on local needs and preferences, feasibility (including costs, availability of materials and complexity), and proven performance.

National standards and guidelines for sanitation and hygiene must also be respected, particularly those related to toilet design, construction and faecal sludge management.

Clean track – risk management

The Clean track focuses on interrupting exposure pathways beyond open defecation. In rural areas, the basic “Clean” components include safe management of relevant waste flows, safe water handling and hygiene practices:

Clean track components and practical implications
Components Practical implications
Toilet use and maintenance; faecal sludge management
  • Consistent use of an intact, clean toilet that provides privacy and is located at a safe distance from wells.
  • A plan for faecal sludge management, through safe on-site or off-site management.
Solid waste management
  • Dedicated area for storage of solid waste, with acceptable final disposal.
  • Organic waste is separately managed.
Animal waste management
  • Livestock are kept separately from infants and young children.
  • Animal excreta are regularly removed from stables and courtyards and stored in a dedicated area protected from children and animals.
Greywater management
  • Greywater managed safely to avoid stagnant water and vector breeding.
Domestic water handling
  • Water transported in clean, closed containers.
  • The domestic water tank is protected from contamination, and water is safely drawn from the tank.
  • Regular cleaning of the water tank.
Handwashing
  • Handwashing equipment, including soap and water, is available.
  • Handwashing with soap is done at critical times.
Food hygiene
  • Clean kitchen and safe food utensil storage.
  • Stored food is covered; raw foods are washed or disinfected.
Green track – resource management

The ambition for the Green track is that at least 75% of resources contained in key waste flows are collected and safely reused, linking sanitation to agriculture and, in some cases, energy production. Key resources and the waste flows in which they are found include:

  • Nutrient reuse: from human and animal excreta, organic residues and ash
  • Water reuse: especially greywater
  • Organic matter reuse: e.g. from compost, manure, digestate and biochar
  • Energy recovery: potentially biogas production from organic residues and manure

Households and communities need practical ways to collect, treat and reuse the main waste flows. Green components (waste flows) and practical implications aimed to ensure quantity, safety and effectiveness are presented in the table below:

Green track components and practical implications  
Green Components Practical implications
Human urine
  • Consistent use of urine collection device
  • Knowledge of safety measures from collection to application
  • Knowledge of measures to reduce nitrogen losses
  • Knowledge of dose and methods of applying urine
Human faeces
  • Consistent use of clean toilets
  • Knowledge of key risk reduction measures for emptying, storage and application of faecal sludge
  • Storage to reduce nitrogen losses and knowledge of dosage and methods of application
Livestock faeces
  • Regular collection
  • Knowledge of key barriers to reduce health risks
  • Knowledge of doses and methods of application
Livestock urine
  • Livestock kept in dedicated area
  • Use of litter to absorb urine
  • Change of litter when saturated
Greywater
  • Productive use of greywater (reuse for composting, irrigation or infiltration to groundwater)
  • Ensure maintenance and sanitary conditions of greywater infrastructure
Ash
  • Wood-ash collection and addition to compost or fields
  • Knowledge of doses and methods of application
Organic waste
  • Separate collection of organic waste, stored in a dedicated area
  • Knowledge on compost production and the dose and methods of applying compost
References and inspiration:

In the Clean and Green pilot project in Burkina Faso, several low-cost, context-adapted technologies with high productive potential were identified for each type of waste flow. These are listed below as either proven in Burkina Faso (green) or as possible options (yellow).

Waste flow Productive technology/practice
Proven in BF Possible in BF
Human excreta
  • Double vault urine diverting toilet
  • Urinals
  • Traditional latrine (+safe emptying) complemented with urinal
  • Fossa alterna with urine separation or urinal
  • Arbor-loo with urine separation or urinal
Animal excreta
  • Composting in traditional composting pits or piles
  • Use of litter to absorb urine
  • Biogas digester (larger investment)
Greywater
  • Addition to composting pits/piles
  • Covered infiltration pit
  • Infiltration in mulch beds around trees
Organic residues
  • Composting in traditional composting pits or piles
Ash
  • Addition to composts
  • Direct addition to field

 

Step 5: Building practical reuse skills

Building practical reuse skills icon

Learning by doing is one of the most effective ways to build confidence, change perceptions, and ensure safe adoption of new practices. Practical reuse training should be introduced as early as possible in the Clean and Green process.

For example, experiments with urine as a fertilizer – either on crops or to enrich compost – can be carried out with minimal infrastructure, using basic urine collection devices such as a jerry can, funnel and a potty. These early reuse trials can, in turn, motivate households to invest in sanitation and to consistently use toilets and related infrastructure.

The Farmer Field School approach, developed by the FAO in the late 1980s and now applied in more than 90 countries, is a proven participatory method that is well suited for building practical reuse skills.

A typical farmer field school compares the effect of different fertilizers on adjacent plots of land. The setup could may include:

  • one plot representing current farmer practice (often low input)
  • one plot using the recommended dose of chemical fertilizers
  • one or more plots using locally available fertilizers (excreta, compost or combinations thereof)

Through regular field sessions, farmers learn about:

  • the characteristics of different types of fertilizers
  • the fertilizer dose for each crop type
  • how and when to apply the fertilizers
  • how to adapt local materials for fertilizer application
  • safe handling, the use of protective equipment, and good hygiene.

Over the season, farmers make regular observations of crop development, followed by an evaluation of the agronomic and economic effects (yield and cost/benefit) of the different treatments.

An example of a farmer field school learning to apply urine in Burkina Faso Danièle Sebgo / SEI

Field visits are often organized so that other farmers, community members and authorities can see results first hand, helping to build wider acceptance and interest.

In Burkina Faso, several ecological sanitation projects have also included complementary trainings on soil and water conservation or compost-making techniques within the farmer field school, depending on community needs.

References and inspiration

Step 6: Monitoring Clean and Green progress

Monitoring Clean and Green progress icon

Monitoring Clean and Green progress helps track whether agreed infrastructure and practices are in place and functioning as intended. Progress is assessed using a set of measurable indicators for each component of the Clean and Green tracks. Results are visualized using a traffic light system:

  • Green light: all indicators are achieved.
  • Yellow light: one indicator is missing.
  • Red light: two or more indicators are not achieved.

This allows households, communities, project staff and local authorities to identify strengths as well as areas requiring improvement.

Clean track – risk management

Progress is the Clean track measured through indicators related to safe human and animal excreta management, solid waste management and greywater management, as well as safe water handling and improved hygiene practices, including handwashing and food hygiene.

Green track – resource management

The Green track emphasizes safe and efficient reuse of recovered resources. Indicators are grouped around three main objectives for each waste flow:

  1. Quantity: the majority (>75%) of each waste flow is collected.
  2. Safety: measures and knowledge are in place to minimize health risks during reuse, following the WHO (2006) multibarrier approach (e.g. treatment, use of protective equipment, withholding period between application and harvest).
  3. Efficiency: nutrient losses are minimized through good practices such as appropriate storage, dosage and application methods of fertilizers (e.g. composted faeces, urine), thereby avoiding crop damage or environmental contamination.
Monitoring roles and methods

Monitoring may be undertaken by different actors, depending on local capacity and institutional arrangements:

  • households through self-assessment
  • village or neighbourhood Clean and Green committees for collective monitoring and coordination
  • NGOs or facilitators for external support and technical verification
  • agricultural or sanitation officers for oversight and integration into local government reporting systems.

Indicators are verified through:

  • direct observation (e.g. cleanliness, infrastructure condition, containment of waste)
  • household interviews or demonstrations (e.g. knowledge of safety measures and reuse modes and doses).
Data collection and learning

Digital tools such as M-Water or KoboCollect can support data collection. Monitoring data can be visualized through dashboards for project teams and authorities, while personalized feedback via QR codes or scorecards can promote learning and continuous improvement. In this way monitoring becomes a process of building local capacity, motivation and shared learning within and across communities.

Clean and Green Dashboard example

SEI has developed an Excel based tool for visualization of Clean and Green progress that can be shared with interested partners (contact Team members) SEI

References and inspiration

Step 7: Recognizing achievements

Recognizing achievements icon

Recognizing achievements is an important way to sustain motivation and reinforce behaviour change in the Clean and Green process. As in CLTS, where communities are certified as “open defecation free” (ODF), Clean and Green can also include structured recognition of households and villages that meet Clean and/or Green criteria.

Household recognition

As households achieve Clean or Green indicators, simple forms of recognition can help reinforce behaviour change and inspire others. This could involve a verification visit by a local Clean and Green committee and a visible label or certificate (e.g. “Clean household”, “Green household”, or “Clean & Green household”). Household recognition encourages continued engagement and helps build local champions.

Community certification

When all households, institutions and public spaces in a village meet the indicators, the entire community can be formally recognized as “Clean”, “Green”, or “Clean & Green”. Community-level certification typically would require a more formal verification process involving district or municipal authorities, drawing inspiration from existing ODF certification processes.

The Clean and Green recognition and certification system is still under development and will need to be refined through field piloting. Early implementation will help identify practical procedures, clarify roles, and test verification tools suited to the local context.

Highlights

Linus Dagerskog
Linus Dagerskog

Research Fellow

SEI Headquarters

Carla Liera
Carla Liera

Policy Fellow

SEI Headquarters

Nhilce N. Esquivel
Nhilce N. Esquivel

Fellow

SEI Headquarters

Brenda Ochola
Brenda Ochola

Communications and Impact Officer

Communications

SEI Headquarters

Mia Shu
Mia Shu

Graphic Designer

Communications

SEI Headquarters